Yes, that is how legislation is passed. However, the order for the production of papers is not legislation, but an order of the House exercising one of its ancient constitutional privileges. That power belongs to each house of parliament separately, and can by exercised by each house individually.Correct me if I am wrong but does a law not have to be passed by parliment , be reviewed by the senate and committees and go through three readings before being proclaimed into law by the Queens representative? Or has the parlimentary system in canada changed while I was away yesterday?
The other point is how does one law supercede another?
As to your second question of how does one law supersede another, it's a far more complex issue. Some legislation will explicitly state that it supersedes others, some have been deemed by the courts to be quasi-constitutional in nature and thus given preferred status. However, in this case we have a conflict between the exercise of a constitutional power and simple legislation -- constitution wins.